Software
HbMap2grace
This software takes xpm files produced by gmx hbond and converts it into a plottable xvg file.
GitHub
Porcupine
Shows the vectors obtained from molecular dynamics principal component analysis, or from normal modes, using the VMD program.
Github
SurfinMD
SurfinMD can be used to calculate the surface of contact between a drug and a protein, separating the results by diferent properties and by amino-acid residues.
GitHub